Merge pull request #3 from camillescott/master

example for storing parsed results
add split data to dict and subdicts
condense proc1 mutation parsing, print output, chng proc1 name to parsing
start snpcount categorizing
made dicts for init and end base for snpcount & start ref base call
make mutdicts add to mutmatrix dicts
update reference: add annotated .gd req'mnt to README, misc. to parallyze
delete reference.gb

replace with updated, functional (re: gd annotation) reference.gbk
Delete short2Ara+3_rel10954.gd.rtf

delete short versions cuz unneeded
Delete shortAra+3_rel10953.gd.rtf

delete short version cuz unneeded
Delete Ara+3_REL10953.gd

b/c nonannotated
Delete Ara+3_REL10954.gd

delete b/c unannotated
Delete Ara+6_REL10985.gd

delete b/c unannotated
change to annotated genomediff, change config ref.gb to ref.gbk
change genomediffs to annotated Ara-1
annotate and add Ara-2 and -3 40K genome diffs
first updates of parse_gdfile with annotated gd for snps
Merge branch 'master' of https://github.com/rohanmaddamsetti/parallyze

merge b/c i stupid w/ pushing
add annotated Ara-2 and -3 to config files: begin ranking user's gd files for mutated genes
luis-suggested defaultdict and append dicts to mutmatrix array