Workshop specific changes to the pipeline, don't run PRISM since this requires a lot of memory. Change Pindel run setting, make the window smaller (less memory consumption)
Tool to convert deletions and insertions in a VCF to a "proper" VCF, including adding sequences and moving to leftmost possible positions
Resolve missing fasta library, use Biopython SeqIO to read fasta
Workshop specific changes to the pipeline, don't run PRISM since this requires a lot of memory. Change Pindel run setting, make the window smaller (less memory consumption)
Tool to convert deletions and insertions in a VCF to a "proper" VCF, including adding sequences and moving to leftmost possible positions
Resolve missing fasta library, use Biopython SeqIO to read fasta
Merge branch 'workshop' of ssh://github.com/ALLBio/allbiotc2 into workshop