fix problematic and unnecessary id collision
update conversion of OBO alternate identifiers

as discussed in
https://github.com/owlcs/owlapi/issues/317#issuecomment-67412550
Test case for alternate identifiers
improve conversion from OWL to OBO, add test case
Use IRIs for replacedBy
improve owl2obo roundtrip

preserve unexpected annotations on alt id entities as untranslatable
axioms, includes test case
fix minor typo
Merge pull request #326 from sesuncedu/version4

owlapi-321 Generics related compilation issue in owlaxiomimpl
Merge pull request #324 from owlcs/OBO_alternate_id_as_deprecated_entity

Obo alternate id as deprecated entity