add a script to summarize a JGI dataset

Signed-off-by: Sébastien Boisvert <boisvert@anl.gov>
add progress

Signed-off-by: Sébastien Boisvert <boisvert@anl.gov>
flush standard output

Signed-off-by: Sébastien Boisvert <boisvert@anl.gov>
increase flushing period

Signed-off-by: Sébastien Boisvert <boisvert@anl.gov>
don't the gzip library in python

Signed-off-by: Sébastien Boisvert <boisvert@anl.gov>
don't show progress

Signed-off-by: Sébastien Boisvert <boisvert@anl.gov>
use the self variable name for structures

Signed-off-by: Sébastien Boisvert <boisvert@anl.gov>
use the self variable name for manager, thread, and timer

Signed-off-by: Sébastien Boisvert <boisvert@anl.gov>
fix white spaces

Signed-off-by: Sébastien Boisvert <boisvert@anl.gov>
add graph store

Link: https://github.com/GeneAssembly/biosal/issues/196
Signed-off-by: Sébastien Boisvert <boisvert@anl.gov>
add script to test spate

Signed-off-by: Sébastien Boisvert <boisvert@anl.gov>
move argonnite kmer counter in its own directory

Signed-off-by: Sébastien Boisvert <boisvert@anl.gov>
add assembly graph builder

Signed-off-by: Sébastien Boisvert <boisvert@anl.gov>