Addition of more FDR options

Additional FDR options to boost speed and limit file sizes
Bump
Merge branch 'master' of https://github.com/molgenis/systemsgenetics
Removed unnecessary "FDR" column
removed @test
fixes for second replacement

necessary for testing
Fix in random generation
format
Introduction of tests
Output of mapping
updates
Removed unused options and added all options to settings.xml
Updated output
Added all options to settings.xml
initialization update
removed exit
Updated settings
Updated test
clean up after test
Merge pull request #297 from Bonder-MJ/master

Additions to properly test the QTL mappint pipeline.