HARDCODED DEBUGGING FOR ANOMALOUS CORE DNADB INSERT
added run_aligner.pl and moved peaks_report to new sequencing script dir. ALigner and BWA use target file instead of ref file. Aligner now follows links to target file for validation
updated POD and now returns output file when called as a library method
upnothing to see here, move along
Moved all seq utils from EFGUtils to SeqTools in new namespace, moved Aligners and PeakCaller there too. Updated Hive modules to use SeqTools. Created run_seq_tools as a cmdline interface to SeqTools
cleaning up the deleted/moved items
Merge branch 'master' of https://github.com/Ensembl/ensembl-funcgen