Initial revision of an ERCC spike-in QC command.  This needs to be in a pipeline with software results.
A new version of the ERCC spike-in QC that uses existing RNA-seq alignments to a reference and annotation that includes the ERCC transcripts.
CgHub: add gmt command tree
CgHub: mv gene torrent to cg hub dir
CgHub: update gene torrent class name
Epitope Prediction : New Module Added
Merge branch 'master' of github.com:genome/genome
CgHub: add base class
CgHub: gene torrent uses base class
CgHub: mv metadata from instdata import to gmt cg hub
CG Hub: update metadata class name
CG Hub: add query cmd to get metadata
CG Hub: add help to gene torrent
Merge branch 'master' of github.com:genome/genome
Epitope prediction : Changes to BindingFilter.pm per feedback on pull request
Use last_succeeded_build instead of lastest_build
Add accessors to configs and projects using the menu item.

This allows usage such as:

genome analysis-project create --analysis-menu-items \
analysis_projects.id=12345

to copy all menu items to a new project.
Add a Template status for Analysis Projects
Only CQID analysis projects that are "In Progress"
remove deprecated "Approved" status