Fix Automaton setup in debug command

Change-Id: I6be39532fbbe66e10c3b721ed65e2128441a64d7
Fix boot duration timing calculation

We were reporting the time it took to boot an instance every time we
discovered that it was configured, even if we had not just rebooted it.

Change-Id: Ide0fd91eab3dec5133bf2f6212fc43f751692a8a