Add tests for built in markdown link recognition
Tests for inline code/code blocks; Fix code blocks

The previous code block support didn't match tildes, indented code
blocks or inline code demarcated by multiple backticks. This adds tests
and support for those three extra types of code block.

Also, extract the parse_tree function out into a separate matcher:
`contain_parsed_output` which simplifies the tests somewhat
Add tests for tiddlylinks and transclusions