Set organism id in genome_info_details

This properly sets the OID for the load new version button.

* Fixes bug where organism id not being set in load new version button
  link.
remove debugging messages

These messages were put in place to verify that their were multiple
entries being generated.
Fix unparsable genome id in log due to missing eol
Minor fix to genome id parsing in log
Add to_hash functions
Merge branch 'master' of github.com:LyonsLab/coge
Add log2 transformation
Auto show analysis when completed [COGE-244]

When an analysis is run with autogo a load dialog will appear
and either the completed analysis will be return or the analysis
will be started.

* Fix dialog running dialog displaying fields when reopened
* Return json for get_results
* Add an error check to get_query_link
* Loader spinner displayed when autogo is set
Extend autoshow analysis to the run button

The analysis if completed should return the results rather than
display the running dialog.

* See [COGE-224]
* Change skipped to already generated to improve usability
Allow special chars in proxy response
Add busy indicator to GC calculations
Update for SoyKB data
added a catch for chromosomes with names like '00'.  Convert name to '0'
added check for chromosome names like '00' to be converted to 0
added additional messages to log; added a fix for regex substitutions on strings longer than 1G -- need to plit and process in chunks or hit an internal limit in perl for tracking position in strings
added code to fix perl's regex from crashing on strings longer than 1G in length.
Minor change to log text
Merge branch 'master' of github.com:LyonsLab/coge
Remove accidental commenting out of exp perm check
Added load flag for debug usage