handling 1.1 to 1.2 upgrades
Added run_name_info to PARC
Changed the external command stdOut to append to
existing text file instead of starting over.

This way multiple processes can use the same
std_out and std_err files.
Converted the maxent exection to use the
same stdOut and stdErr files for both
the java maxent component as well as the
R consolidation
Updated PARC to use a new list csv
for each unique run.  This way
changes to the inputs will propogate downstream.
updated documentation