Add protobuf jars
Use most recent protobuf
Add dependency information
Use C++ instead of C
Protobuf message definition
ErrorCode should not be mutable
Get rid of tox_new and use Closeable for tox_kill
Be explicit about encodings.
Detailed javadoc for possible errors
Generate Protobuf C++ code and include in JTox.cpp
Generate Java Protobuf Code
Get started on interface implementation
Begin work on native interface code
Use C++11 style for loop
Tox Do
Progress on thread safety of tox4j
Update thread safety documentation
Fix typo
Update bootstrap documentation
Clean up CMakeList.txt files

Set CXX Flags instead of C Flags, properly delete java class files on
make clean, fix compiler warnings of -Wall -Werror -pedantic