only added some comments and/or print statements
modified the code that checks to see if files appear to be complete
minor bug fix -- variable "s" was being reused by accident
changed tDir from /tmp/$uName/pw_scratch to use $TCGAFMP_LOCAL_SCRATCH
new pairwise processing script and config file which handle each pair
of type comparisons separately
Update README.md
Update README.md
Update README.md
Update README.md
Update README.md
Update README.md
Update README.md
Update README.md
Update README.md
bumping version for release
fixing typo
Merge branch 'develop' into feature/common-utilities