first commit after most of the refactoring is complete.
code format and fixes
added convert.sh to help migrate from flap to leo
[maven-release-plugin] prepare release leo-2013.09.0
[maven-release-plugin] prepare for next development iteration
re-work with new package name and cleanup
Merge branch 'master' of http://decipher.chpc.utah.edu/gitblit/git/bones/leo
added batchdbreader test fixes and other fixes; now all tests pass
more cleanup
added jncss to pom for site generation
moved conf to resources
moved conf to resources
added collection reader
[maven-release-plugin] prepare release leo-2013.10.0
[maven-release-plugin] prepare for next development iteration
more bug fixes and rework
Hashmap -> map bug fix
[maven-release-plugin] prepare release leo-2013.10.1
[maven-release-plugin] prepare for next development iteration
bug fix in sql