Renamed drupalgap_modules_load() to drupalgap_load_modules() and moved it closer to the top of the file.
Moved the themes directory out of the src directory.
Changed drupalgap.modules to Drupal.modules.
Added module types (core, contrib, custom) back to Drupal.modules. Brought back the full drupalgap_bootstrap(). Fixed drupalgap_load_modules() to only load the .js files for contrib and custom modules, and then to fire all hook_installs(), including core. Changed drupalgap_theme_load() to drupalgap_load_theme().
Removed some debug statements.
Added mention of change from drupalgap.modules to Drupal.modules.