Fix file handle/line ending issues so that tests pass on Windows
Merge pull request #1057 from melissalinkert/windows-tests

Fix file handle/line ending issues so that tests pass on Windows
Update auto-generated documentation

Repository: openmicroscopy/bioformats
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Generated by BIOFORMATS-5.1-latest-docs-autogen#57 (http://ci.openmicroscopy.org/job/BIOFORMATS-5.1-latest-docs-autogen/57/)