WIP. system upgrade

Notable Upgrades

- Ubuntu to 14.04 LTS
- PHP to 5.5
- Apache to 2.4
- Puppet to 3.6.x

Small changes:
- host from iliosdev to ilios.dev
- prettier bash

Work in progress. Do not merge yet.
Is there an upstream PR for this?  After we merge can you make sure to put in a ticket in ilios that references the upstream issue so we can go back to the official version when this is merged?