Allowing a 'baseDir' to be provided in the config.

The 'baseDir' setting will be the new default that mimosa-fubu runs from. This enables the user to run mimosa from a directory with a target directory that mimosa manipulates. Removes dependence upon only running from the "project base" directory. If 'baseDir' is not set, mimosa-fubu defaults to the current working directory.

*NOTE:* This pull request shows some files as having changed in their entirety. This is because of line-ending issues between unix and Windows. This means that these commits will need to be reviewed individually to get a true understanding of the changes. I apologize.