picard-tools: update to version 1.110

Closes #788.
Import hwloc from core
Remove reference to homebrew/science tap in dependencies.

Closes #767.
snpeff 3.5g

Closes #792.
pocl: migrate from core.
SExtractor: new formula.

Closes #753.
Hdf5: Add option for C++ bindings

Closes #795.
t-coffee 10.00.r1613: New formula

A collection of tools for Computing, Evaluating and Manipulating
Multiple Alignments of DNA, RNA, Protein Sequences and Structures
vcftools: use debian-style versioning.

x.xxa is incorrectly recognized as an alpha release, and x.xxa_1 is
perpetually seen as outdated.
phlawd 3.4a: New formula

Mega-phylogeny approach for comparative biology: an alternative to
supertree and supermatrix approaches

Closes #789
spades: Add DOI
idba 1.1.1: New formula

IDBA is a practical iterative De Bruijn Graph De Novo Assembler for
sequence assembly in bioinfomatics.
idba: Do not install bin/test

Install generically named programs in libexec.
Lammps: update PYTHONPATH info in caveats.

Closes #797.
MB-System: New formula.
Pastix: bug fix release.
last 418: New formula

LAST finds similar regions between sequences.
openblas: Remove outdated comment

I made that comment ages ago when OpenBLAS did download an LAPACK
on-demand during build. This is no longer the case as far as I can tell.
openblas: 0.2.9rc2

Going to a RC here (exceptionally) because on newer Macs (I tested on
two, one haswell and one Mac Pro) the CPU auto detection fails and
formula install aborts. Also if we would force a certain TARGET, the
logic for that would be quite complicated. Further, the test did not
pass on a haswell based system. I hope this does not break other
software Homebrew/science.
openblas: Need to add version number explicitly