Admin: Fix missing icon, overlong option text.
Theme: Update 2column for bootstrap 3
Core: Remove options that are no longer relevant to Bootstrap 3
Turn Modernizr off by default and include html5shiv and respond.js as separate head requests for IE<9 only
Externals: Update Respond and normalize to current tags
Fix typo
JsTree: Fix missing icons
Core: Add option for BS Panels
Core: Add option for BS List Groups
Core: Simplify Bootstrap options by grouping elements together in single options. May assume too much?
jQ Mobile: Update Touch library to 1.3.2 (1.4 requires jQ 1.8+)
jQ Mobile: Update Touch library to 1.4.2 and require jQ1.9 for use.
Core: Replace siteurl option with constant in JS
Admin: remove admin button from menu (replaced by logo link), remove _getNav and _selectedPages function from global.php (replaced by Jojo:getNav and Jojo::selectedPages from 1.2(?))
Create README.md
Admin: Add (and update) plugin versions to the plugin manager. Replace php-markdown with (git flavoured) parsedown as a submodule
Admin: Manage Plugins tidy up - add versions, parse readmes for markdown. Update versions, decriptions etc across core plugins
jsTree: Check and exclude orphaned items which break the tree structure
Setup: update orphaned page alert text for clarity
Core: add Parsedown as a submodule