fixes broken
breaking the cycle with cyclus
adds inheritance diagrams
adds uml for backend
adds diagram
moves cyamore bit to the other cycamore bit
better tables
fixes conflict
tables where I put them
adds concluision
adds agent uml diagram
adds simplesim image
fixes arclong to acrlong
reduces the chaos in the bibliographies to just one file of chaos
tweaks to bib
gets rid of the other two bib files now that everything is merged into fundamentals.
added epub format
Merge pull request #36 from scopatz/epub

added epub format
note about robert's htc usage
Merge pull request #37 from rwcarlsen/more-htc

note about robert's htc usage