modified:   code/batch-processing/README.txt
	modified:   code/build-networks/document-citation/networkbuild.py
	modified:   code/cluster-analysis/Two Round Clustering/TwoRoundClusterMapping.py
	modified:   code/cluster-analysis/topic-areas/AffinityNetworkGenerate.py
	deleted:    parameters/parameters-global_example.txt
	code/batch-processing/AffinityNetworkGenerateStep1.sh
	code/batch-processing/AffinityNetworkGenerateStep2.sh
	code/batch-processing/cluster-analysis-dynamic.sh
	code/batch-processing/clusterInformationGenerate.sh
	code/batch-processing/clustering-CitationNetwork.sh
	code/build-networks/biblio-coupling/
	code/build-networks/document-citation/FindGiantComponent.py
	code/cluster-analysis/Two Round Clustering/ClusterLabelTransfer.py
	code/cluster-analysis/Two Round Clustering/CompareTwo.py
	code/cluster-analysis/Two Round Clustering/CompressedNetworkGenerate.py
	code/cluster-analysis/Two Round Clustering/NetworkShrink.py
	code/cluster-analysis/Two Round Clustering/ObjectTransfer.py
	code/cluster-analysis/topic-areas/AFNGenerate.sh
	code/cluster-analysis/topic-areas/AffinityNetworkPajektoGephi.py
	code/cluster-analysis/topic-areas/AffinityNetworkPajektoGephiNotFix.py
	code/cluster-analysis/topic-areas/AnnualMetricsGenerate.py
	code/cluster-analysis/topic-areas/ExtractKeyInformation.py
	code/cluster-analysis/topic-areas/JournalFreq.py
	code/cluster-analysis/topic-areas/LinkExplanation.py
	code/cluster-analysis/topic-areas/PorportionExplanation.py
	code/cluster-analysis/topic-areas/SharedPercent.py
	code/cluster-analysis/topic-areas/TopicSizeGraph.py
	code/cluster-analysis/topic-areas/Zoomout.py
	code/cluster-analysis/topic-areas/clustersize.py
	code/cluster-analysis/topic-areas/clustersize2.py
	code/cluster-analysis/topic-areas/dataGenerate.py
	code/cluster-analysis/topic-areas/transferPajektoGephi.py
	new file:   code/batch-processing/AffinityNetworkGenerateStep1.sh
	new file:   code/batch-processing/AffinityNetworkGenerateStep2.sh
	new file:   code/batch-processing/cluster-analysis-dynamic.sh
	new file:   code/batch-processing/clusterInformationGenerate.sh
	new file:   code/build-networks/biblio-coupling/networkbuild.py
	new file:   code/build-networks/document-citation/FindGiantComponent.py
	new file:   code/cluster-analysis/Two Round Clustering/ClusterLabelTransfer.py
	new file:   code/cluster-analysis/Two Round Clustering/CompareTwo.py
	new file:   code/cluster-analysis/Two Round Clustering/CompressedNetworkGenerate.py
	new file:   code/cluster-analysis/Two Round Clustering/NetworkShrink.py
	new file:   code/cluster-analysis/Two Round Clustering/ObjectTransfer.py
	new file:   code/cluster-analysis/topic-areas/AFNGenerate.sh
	new file:   code/cluster-analysis/topic-areas/AffinityNetworkPajektoGephi.py
	new file:   code/cluster-analysis/topic-areas/AffinityNetworkPajektoGephiNotFix.py
	new file:   code/cluster-analysis/topic-areas/AnnualMetricsGenerate.py
	new file:   code/cluster-analysis/topic-areas/ExtractKeyInformation.py
	new file:   code/cluster-analysis/topic-areas/JournalFreq.py
	new file:   code/cluster-analysis/topic-areas/LinkExplanation.py
	new file:   code/cluster-analysis/topic-areas/PorportionExplanation.py
	new file:   code/cluster-analysis/topic-areas/SharedPercent.py
	new file:   code/cluster-analysis/topic-areas/TopicSizeGraph.py
	new file:   code/cluster-analysis/topic-areas/Zoomout.py
	new file:   code/cluster-analysis/topic-areas/clustersize.R
	new file:   code/cluster-analysis/topic-areas/clustersize.py
	new file:   code/cluster-analysis/topic-areas/clustersize2.py
	new file:   code/cluster-analysis/topic-areas/dataGenerate.py
	new file:   code/cluster-analysis/topic-areas/transferPajektoGephi.py