os.unlink call here is unnecessary and causes errors when absent [ci skip]
more docstring [ci skip]
workaround for lastal producing null result
a little more log output and dont trim output filename until we need to [ci skip]
pysam 0.8.1, etc
fix variable ref [ci skip]
attempt to workaround py2.7 broken build
Revert "attempt to workaround py2.7 broken build"

This reverts commit 13f31f745ffec8ab77cdee7cb511724e586ee7cb.
map os.unlink [ci skip]
coverage_summary
add a header to the report [ci skip]
add --runFile option to coverage_summary [ci skip]
seq date as well [ci skip]
fixes [ci skip]
resolve merge [ci skip]
update reports [ci skip]
polish output report [ci skip]
params [ci skip]
filter_short_seqs was filtering backwards
Merge pull request #51 from broadinstitute/dp-indels

fix some reworked assembly pipelines, improve some reports