Use the bot's debug logger for printing input instead of 'print'
Four logging/bot changes:

- Add a debug.log with level=DEBUG.
- Change the time format in the log files to [%Y-%m-%d][%H:%M:%S]
- Add a [%H:%M:%S] time prefix to console output.
- Don't create connections until all plugins are loaded. This is to ensure that all plugins using server output are loaded before server connection begins.
Rewrite log.py, changing to use .format instead of % as well as add a [{server}] prefix to all logged messages
Add input.has_permission convenience method
Implement a lot more permissions methods. Also, make permissions not require CloudBot.
Revamp admin plugin
Merge pull request #250 from daboross/patch-bot-logging-updates

Logging changes in bot.py
Merge pull request #251 from daboross/patch-rewrite-log.py

Rewrite / update log.py plugin
Merge pull request #252 from daboross/patch-use-bot-logger-for-input

Update irc.py to use bot.logger
Merge pull request #253 from daboross/patch-add-has_permission

Add input.has_permission convenience method
Merge pull request #255 from daboross/patch-admin-plugin-updates

Update admin.py to completely work in refresh
Merge branch 'patch-permissionmanager-updates' of https://github.com/daboross/CloudBot into daboross-patch-permissionmanager-updates

Conflicts:
	core/irc.py
give config a .stop like loader
this stuff makes me hurt inside (it didn't match the lines below)
de-lambda
blha303 updates to plpaste
Set config indent to 4.