simplifying bumphunter man file with a reference to bumphunter

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/minfi@89741 bc3139a8-67e5-0310-9ffc-ced21a209358
adding functionality so user can supply permutations

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/minfi@89789 bc3139a8-67e5-0310-9ffc-ced21a209358
minor change. up the version

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/minfi@89791 bc3139a8-67e5-0310-9ffc-ced21a209358
minor cosmetic change

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/minfi@89793 bc3139a8-67e5-0310-9ffc-ced21a209358
minor bug fix

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/minfi@89795 bc3139a8-67e5-0310-9ffc-ced21a209358
added getOOB, getSnpBeta functions
Merge branch 'master' of github.com:kasperdanielhansen/minfi
version bump, updated NEWS
Commit made by the Bioconductor Git-SVN bridge.
Consists of 3 commit(s).

Commit information:

    Commit id: fce2eff167fb24dd3aff96f6ea53fcb0dafa3865
    Commit message:
    added getOOB, getSnpBeta functions
    Committed by Kasper Daniel Hansen <kasperdanielhansen at gmail.com>
    Commit date: 2014-05-04T22:27:28-04:00

    Commit id: 9dbd57bf13397a090baf3dc7e0d64e48a29ca723
    Commit message:
    Merge branch 'master' of github.com:kasperdanielhansen/minfi
    Committed by Kasper Daniel Hansen <kasperdanielhansen at gmail.com>
    Commit date: 2014-05-04T22:28:37-04:00

    Commit id: bd0a9e42ba8ccb8904c3b35850be5ef514712f9f
    Commit message:
    version bump, updated NEWS
    Committed by Kasper Daniel Hansen <kasperdanielhansen at gmail.com>
    Commit date: 2014-05-04T22:30:45-04:00

From: Bioconductor Git-SVN Bridge <bioc-sync@bioconductor.org>

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/minfi@89904 bc3139a8-67e5-0310-9ffc-ced21a209358
fixed some reading issues
version bump
Merge branch 'master' of github.com:kasperdanielhansen/minfi
updated minfi reference after publicaton
bumped version number
Update DESCRIPTION

Name was mispelled
Merge pull request #3 from Jfortin1/patch-1

Update DESCRIPTION
bumped version; add dropLociWithSnps
edited CITATION
Fixed getOOB.R 

Interchanged getGreen and getRed for one of the probe addresses
Merge pull request #4 from Jfortin1/patch-2

Fixed getOOB.R