Slight blast local modifications
Fixed bug of not reading line and cutting of input at whitespace
Some minor database changes, mainly horrible workarounds
Task blast alterations, bugfixes etc.
Changed File[] array to Filename array to avoid too many open files exception in Task_Blast
Fixed uploading input as database name
Fixed filepath not having separator for previous fix
Added colored stdout, also refixed Too Many Files problem, again. Hopefully should be fixed proper now... :(
Fixed a bug where parsing with shorttitles set when shorttitle not present breaks parse
Latest before messing with fasta parser
Latest changes
Added input check is null because I can't be relied upon to actually put input into the program
Eradicating the use of Generic
Fixed major memory leak bug. This may have caused other bugs so will need to look out for those
Fiddle about with this and the mysql memory bug issue
General changes surrounding memory bug fix
Silly typo causing recursion when string input used, fixed
Attempt to simplify basic contig so that position of reads was less of a mindfield, improves SAM parsing now
Minor changes
Initial inclusion of AssemblyReport for meta assembly report specific to work with cherry picker