* org.el (org-set-regexps-and-options): Fix

* org.el (org-set-regexps-and-options): Allow
`org-complex-heading-regexp-format' to match [/] and [%]
cookies when they are both before and after the heading.

Thanks to Nicolas Bercher for reporting this.
org-table.el (org-table-eval-formula): Fix conversion of inactive timestamps

* org-table.el (org-table-eval-formula): Fix conversion of
inactive timestamps to active ones.

Thanks to Gang Chen for reporting this.
org.el (org-fast-tag-selection): Fix window splitting

* org.el (org-fast-tag-selection): Fix window splitting.

This is basically the same fix than the one listed here:
http://article.gmane.org/gmane.emacs.orgmode/34802

TINYCHANGE
org.el (org-insert-heading): Fix bug

* org.el (org-insert-heading): Fix bug when trying to insert a
heading when point is before the first headline and not at the
beginning of a line.
Continue fixing fdb4b54e
ob-R.el (org-babel-R-assign-elisp): Fix parsing of a one-dimensional value

* ob-R.el (org-babel-R-assign-elisp): Fix parsing of a
one-dimensional value.

Thanks to Daniil Mirylenka for the fix.
Fix error prone babel table output format detection

* ob-core.el (org-babel-insert-result): Test all list elements against
listp and (eq element 'hline) instead of checking just the first.

org-babel table output uses different formatting for a list of lists,
but detects it incorrectly causing an error. An example of a block
causing an error is an emacs lisp source block containing just 1 line:
'((1) 2)
ox-org: Fix missing footnote definitions

* lisp/ox-org.el (org-org-headline): Ignore footnote sections.
(org-org-section): New function.

Some footnote definitions may be outside of the scope of the export
and, therefore, do not appear in the generated output.  This patch
ensures that all footnote definitions appear at the end of the section
they belong to.

Thanks to Leonard Randall for reporting it.
http://permalink.gmane.org/gmane.emacs.orgmode/86558
org-attach.el (org-attach-dir): Fix bug

* org-attach.el (org-attach-dir): When the property is
"inherited" from a variable outside of the file, do not use
`org-entry-property-inherited-from' to find the attachment
position, assume we need to go back to the current headline.
ox-org: Tiny refactoring

* lisp/ox-org.el (org-org-section): Tiny refactoring.  Use appropriate
  property.
org-agenda.el: Rewrite agenda filtering using text properties

* org-agenda.el (org-agenda-write): Code cleanup.
(org-agenda-mark-filtered-text)
(org-agenda-unmark-filtered-text)
(org-agenda-fix-tags-filter-overlays-at): Delete.
(org-agenda-remove-marked-text): Use the `property' argument
instead of hard-coding 'org-filtered.
(org-agenda-filter-remove-all): Use `org-agenda-finalize'.
(org-agenda-filter-hide-line): Rewrite using text properties
instead of overlays.
(org-agenda-remove-filter): New function.
(org-agenda-filter-show-all-tag)
(org-agenda-filter-show-all-cat)
(org-agenda-filter-show-all-re): Rewrite using
`org-agenda-remove-filter'.
org.el (org-entry-properties): Ensure the special property is not commented out when matched

* org.el (org-entry-properties): Ensure the special property
is not commented out when matched.

Other an agenda view like (tags "DEADLINE<\"<+0d>\"" ...) will
wrongly list an entry with a commented out DEADLINE line, because
org-agenda-skip only skip commented out stuff on the current line,
with is the headline itself when using "tags" agenda.

Thanks to Sébastien for reporting this.
org-agenda.el (org-agenda-redo): Reapply the filters correctly

* org-agenda.el (org-agenda-redo): Reapply the filters
correctly.

TINYCHANGE
org-agenda.el: Fixes for top headline filtering

* org-agenda.el (org-agenda-local-vars): Add
`org-agenda-top-headline-filter'.
(org-agenda-filter-by-category): Fix syntax.
(org-agenda-filter-show-all-top-filter): New function.
(org-agenda-filter-by-top-headline)
(org-agenda-filter-remove-all): Use the new function.
(org-agenda-filter-top-headline-apply): Use a dedicated symbol
`top-headline'.

Thanks to Greg Troxel who provided a preliminary patch.
org-habit.el (org-habit-insert-consistency-graphs): Don't remove filter overlays

* org-habit.el (org-habit-insert-consistency-graphs): Don't
remove filter overlays as we don't use overlays for filters
anymore.
org-agenda.el (org-cmp-ts): Fix call to `type'

* org-agenda.el (org-cmp-ts): Argument `type' is not optional.
Don't quote it.
org.el (org-cycle-internal-local): Fix trailing character bug

* org.el (org-cycle-internal-local): Don't show a trailing
character when cycling a subtree that ends with a non-newline
character at the end of the buffer or the narrowed region.
org.el: Don't advise `outline-end-of-subtree'

* org.el (org-move-subtree-down): Use `org-end-of-subtree'
instead of `outline-end-of-subtree'.
(outline-end-of-subtree): Remove advice.

* org-mouse.el (org-mouse-move-tree, org-mouse-do-remotely):
Use `org-end-of-subtree' instead of `outline-end-of-subtree'.
org-agenda.el (org-agenda-remove-filter): Use `save-excursion'

* org-agenda.el (org-agenda-remove-filter): Use `save-excursion'.
org-capture.el (org-capture-steal-local-variables): Don't steal `mark-active'

* org-capture.el (org-capture-steal-local-variables): Don't
steal `mark-active', which should be nil in the target buffer.

Thanks to Alex Kosorukoff for raising this issue.