July 14 2014

for the added stuff.

[ticket: X]

 Please enter the commit message for your changes. Lines starting
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 On branch master
 Changes to be committed:
   (use "git reset HEAD <file>..." to unstage)

	modified:   ClusterPattern.py
	modified:   GroupComposition.py
	modified:   Proteins/DomainFamily.py
	modified:   Proteins/DomainFamily.pyc
	new file:   Proteins/FilterHammodia.py
	new file:   Proteins/FilterHammodia.pyc
	modified:   Proteins/HMMParser.py
	modified:   Proteins/HMMParser.pyc
	modified:   Proteins/ProteinRunner.py
	new file:   Proteins/SRSCytoscape.py
	new file:   Proteins/SRSCytoscape.pyc
	new file:   Proteins/SequenceSelect.py
	new file:   Proteins/SequenceSelect.pyc
	modified:   TesterScript.py