First draft of Scalpel integration
First draft of Scalpel integration
Merge branch 'scalpel' of https://github.com/mjafin/bcbio-nextgen into scalpel
mutect.py and scalpel.py bug fixes for integration with bcbio
mutect.py small fix to assume two separate callers always used
First draft of Scalpel integration
mutect.py and scalpel.py bug fixes for integration with bcbio
mutect.py small fix to assume two separate callers always used
Merge branch 'scalpel' of https://github.com/mjafin/bcbio-nextgen into scalpel
Default filter value REJECT for common variants in scalpel paired mode calling
Default to scalpel for indels in mutect.py if not using Appistry mutect
Trailing white spaces removed
Merge branch 'master' into scalpel
Added standalone support for Scalpel calling
Merge pull request #432 from mjafin/scalpel

Scalpel