Commit made by the Bioconductor Git-SVN bridge.
Consists of 30 commit(s).

Commit information:

    Commit id: f5a818778cc99212c0ed655a84406789622c6a7c
    Commit message:
    * version bump
    * fix use of wait_until in 'test-server.R'
    * all tests pass with post R-3.1 release
    Committed by hcorrada <hcorrada at gmail.com>
    Commit date: 2014-04-21T13:26:16-04:00

    Commit id: e5e2838aebbc5ac6029cbfd2945606845a753062
    Commit message:
    Merge branch 'master' into newProvider
    Committed by hcorrada <hcorrada at gmail.com>
    Commit date: 2014-04-21T18:29:22-04:00

    Commit id: b206b802749b2c183d492beb499b1ba0d0ee306f
    Commit message:
    server test works again
    Committed by hcorrada <hcorrada at gmail.com>
    Commit date: 2014-04-21T19:07:24-04:00

    Commit id: 48d4251700a742bd2efa24960b12f74d2e98560f
    Commit message:
    connection through 'EpivizDeviceMgr' works again
    Committed by hcorrada <hcorrada at gmail.com>
    Commit date: 2014-04-21T19:36:29-04:00

    Commit id: 121cc24cdfefc17b1eb63d8a6bb97bd22535c7d1
    Commit message:
    measurement mgr for blocks ok
    Committed by hcorrada <hcorrada at gmail.com>
    Commit date: 2014-04-21T20:26:37-04:00

    Commit id: aac393baff128a3b92c6ce9ab2ac1d76369943a3
    Commit message:
    measurement management ok for bp data
    Committed by hcorrada <hcorrada at gmail.com>
    Commit date: 2014-04-21T21:58:45-04:00

    Commit id: 5165f647e96c0eb57347b37d6d407962d3f3e696
    Commit message:
    measurement mgr ok for feature data
    Committed by hcorrada <hcorrada at gmail.com>
    Commit date: 2014-04-21T22:05:08-04:00

    Commit id: f0b842abd031112c498fdfa4c5d4fac13c247fc3
    Commit message:
    getRows for blocks ok
    Committed by hcorrada <hcorrada at gmail.com>
    Commit date: 2014-04-21T23:29:13-04:00

    Commit id: 445e038884343878b8aa999337792f290e5d4c1e
    Commit message:
    getValues ok for feature data
    Committed by hcorrada <hcorrada at gmail.com>
    Commit date: 2014-04-22T01:15:24-04:00

    Commit id: 115023c89ec1e69b11dd43e49bfdfbbf3e8aa0eb
    Commit message:
    before cleanup
    Committed by hcorrada <hcorrada at gmail.com>
    Commit date: 2014-04-22T11:32:04-04:00

    Commit id: bb6196c0412a801645672826a0a5b74827b91bb2
    Commit message:
    refactored sorting and fixed update
    Committed by hcorrada <hcorrada at gmail.com>
    Commit date: 2014-04-22T12:16:40-04:00

    Commit id: 11bd10615f89bf06558a3983f7f4fad654bbf0cf
    Commit message:
    navigate and slideshow updated to v2
    Committed by hcorrada <hcorrada at gmail.com>
    Commit date: 2014-04-22T12:42:44-04:00

    Commit id: 13863d856b64ae33de33f9f5fd30423bb982b2b8
    Commit message:
    server and register test passed
    Committed by hcorrada <hcorrada at gmail.com>
    Commit date: 2014-04-22T13:01:28-04:00

    Commit id: f22fcf59dc64e6653b236b68cbb6242382deb653
    Commit message:
    addMeasurements test passed
    Committed by hcorrada <hcorrada at gmail.com>
    Commit date: 2014-04-22T13:42:55-04:00

    Commit id: 7d6eba0ded55683be885893c3a25b68647248f8c
    Commit message:
    measurement testing done
    Committed by hcorrada <hcorrada at gmail.com>
    Commit date: 2014-04-22T14:21:03-04:00

    Commit id: ae25e2dc36332889bf6ef76cc7a707259d037655
    Commit message:
    data fetch tests done
    Committed by hcorrada <hcorrada at gmail.com>
    Commit date: 2014-04-22T15:41:57-04:00

    Commit id: 7cbfb0a782ef83ef509f8fa1653f7b665f4e75da
    Commit message:
    add block chart ok
    Committed by hcorrada <hcorrada at gmail.com>
    Commit date: 2014-04-23T10:47:17-04:00

    Commit id: c9a9037ea1267f9b0716d63ffef63509ca4665e9
    Commit message:
    all add charts ok
    Committed by hcorrada <hcorrada at gmail.com>
    Commit date: 2014-04-23T10:52:20-04:00

    Commit id: f7b890014a6ccf750daa22ae50288f8ad399fac8
    Commit message:
    rmChart switched to v2
    Committed by hcorrada <hcorrada at gmail.com>
    Commit date: 2014-04-23T10:56:09-04:00

    Commit id: b5d83cd2e44f9ac82f0a34e423963ebb9512fe30
    Commit message:
    rmDevice tested
    Committed by hcorrada <hcorrada at gmail.com>
    Commit date: 2014-04-23T10:58:49-04:00

    Commit id: fce22f0ec3ef87366b497c28bebbe28b0313e8c1
    Commit message:
    update the vignette to v2
    Committed by hcorrada <hcorrada at gmail.com>
    Commit date: 2014-04-24T08:51:52-04:00

    Commit id: d2dc8c80de1254b28204962691a014ef23940a2b
    Commit message:
    * fix metadata scalar wrap error
    * add 'gists' argument to 'startEpiviz'
    Committed by hcorrada <hcorrada at gmail.com>
    Commit date: 2014-04-24T14:09:39-04:00

    Commit id: e6e72eccbc04460f82a6d31a94eb95be5063f836
    Commit message:
    debug vignette
    Committed by hcorrada <hcorrada at gmail.com>
    Commit date: 2014-04-24T15:35:54-04:00

    Commit id: 3a7595dd2a2b4828aa6f0826784e392a729c7cfe
    Commit message:
    fixed reorder bug
    Committed by hcorrada <hcorrada at gmail.com>
    Commit date: 2014-04-25T01:05:51-04:00

    Commit id: 55ca7587072ce7f3900bea730319688d4b7fc9b3
    Commit message:
    improve handling of metadata in 'EpivizFeatureData-class'
    Committed by hcorrada <hcorrada at gmail.com>
    Commit date: 2014-04-25T03:27:31-04:00

    Commit id: 275bd2be12a48e39625aa3239e3b1d9d48a05844
    Commit message:
    test charts ok
    Committed by hcorrada <hcorrada at gmail.com>
    Commit date: 2014-04-25T15:04:00-04:00

    Commit id: 88b32627f5c0fae3e4cefd72a8f2522cd3bf81b9
    Commit message:
    device tests ok
    Committed by hcorrada <hcorrada at gmail.com>
    Commit date: 2014-04-25T16:12:10-04:00

    Commit id: 21e5f9cab818b222d4b5f2af13a89e7744888ee9
    Commit message:
    push reorder call to class update method
    Committed by hcorrada <hcorrada at gmail.com>
    Commit date: 2014-04-26T06:16:28-04:00

    Commit id: 132f60e255078b3dbc64b599ab410aa2c0170d58
    Commit message:
    add 'gists' parameter description to 'startEpiviz.Rd'
    Committed by hcorrada <hcorrada at gmail.com>
    Commit date: 2014-04-26T06:28:15-04:00

    Commit id: f72efbce97ab74a80f666912c5669977b3946e57
    Commit message:
    Merge branch 'newProvider'

    This implements the new 'Data Provider API' used in Epiviz 2. See
    http://epiviz.cbcb.umd.edu/help for more details. The front-end
    epivizr API does not change at all. This commit also adds the
    'gists' argument to 'startEpiviz' so scripts can be imported
    to epiviz via github gists.
    Committed by hcorrada <hcorrada at gmail.com>
    Commit date: 2014-04-26T06:30:44-04:00

From: Bioconductor Git-SVN Bridge <bioc-sync@bioconductor.org>

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/epivizr@89509 bc3139a8-67e5-0310-9ffc-ced21a209358