the alt column is required for the comp_hets tool.
Update ez_setup to latest version to resolve issues with pypi mirrors: chapmanb/bcbio-nextgen#499
update get_families logic.
Merge branch 'master' of github.com:arq5x/gemini
added tool for finding runs of homozygosity.
remove query limit
much improved ROH pruning algorithm. Thanks to @udp3f
improve pruning of ROH runs.
Validate requested sample ids.
speed up unit testing.
[TST] add tests for ROH tool.
remove silly whitespace
typo in help
typo in help
fix ROH tests
skip loading gene tables if asked
Update installation to use new bcbio conda collection with pre-built bx-python packages. chapmanb/bcbio-nextgen#499