Added some test Rcpp and inline code
Made a C++ function that checks sequences for N, n and uninformative sites - currently little performance gain is achieved
Merge branch 'master' into performance
Cleaned Code for C++ speedier functions.
Changed R code for checking sequences to C++ code
Working on making basic scanning loop C++
Bit more work on C++ scan
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Merge branch 'performance' of https://github.com/Ward9250/HybRIDS into performance

Conflicts:
	R/HybRIDSObject.R
	R/SimilarityAnalysis.R
Compiled .o files
Edited inputDNA function
Got rid of object files
Removed some vector lines
Added triplet refining by partition feature
Merge branch 'performance' of https://github.com/Ward9250/HybRIDS into performance
Corrected printing method for HybRIDS object.
Made some methods for the DNAreference object in preperation of code cleanup.
Simplified plotting code of triplets for now in HybRIDS object method and added ability to plot many triplets with ALL selection
Removed File Conflicts and sub-functionalized the process of reading in DNA

Code for these steps is now more readable.
UserBlocks are now controlled by their own reference class