Made bash/sh scripts more portable by using #!/usr/bin/env
Made it so that no binaries are in git whatsoever- they are all downloaded from the official distribution.
The official binaries are retrieved using ant- making ant a dependency.
This ant system should work on both windows and linux, but hasn't been tested or called on windows (from run-cyc.bat?) yet.
In the future I may distribute the ant jar deployed in the official distribution, and call that or the system one, which priority on the system one if present.
Ignored the server/cyc/run/transcripts/ path.
Merge branch 'GitIgnoreCycTranscripts' into develop
Merge branch 'UpdateBashFeature' into develop
Merge branch 'AntGetJarTaskFeature' into develop

Conflicts:
	.gitignore
	scripts/run-cyc.sh