fixed doxy tag
PolyTables now contain Ptables
cleanup
header cleanup
updated typedef. removed implict cast operator
added file dox
summary stats
updated/corrected list of examples
coalescent sim stuff now in namespace Sequence::coalsim
Sequence::coalsim
draft of coalsim section
typo fixed. disclaimer added.
document functions
reorg
document file
added brief
document file
sam & bam
Merge branch 'dev' into gh-pages
reprocess doxygen file