Add options to bash completion and sort options

This adds the following options:
 - save: --output -o
 - load: --input -i
 - run/create: --ipc --mac-address

When implementing, I found it hard to spot the appropriate places for the options because there was no consistent sort order. Therefore I added a refactoring step that introduces a new sort order:
_Arrange options sorted alphabetically by long name with the short options immediately following their corresponding long form._

This also removes support for the following deprecated options:
 - images: --viz -v --tree -t