Minor cleanup on interleaved FASTQ input format. Added dependency which is necessary for running downstream.
Merge pull request #282 from fnothaft/ifq-fix

Minor cleanup on interleaved FASTQ input format.
fix refname comment
Merge pull request #283 from hammerlab/refname-comment

Fix reference name comment
Removing ADAM format directory, and updating avro data file path and pom.xmls for bdg-formats move.
Merge pull request #280 from fnothaft/move-to-bdgformats

Move to bdg-formats
Cleaning up build warnings.
Merge pull request #284 from fnothaft/clean-warnings

Cleaning up build warnings.
Refactoring read groups to increase the amount of data stored.
Merge pull request #285 from fnothaft/sample-to-converter

Refactoring read groups to increase the amount of data stored.
Added the TrackedLayout class.
Added filterByOverlappingRegion to AdamRDDFunctions
Added the VizReads tool to CLI.

VizReads is a tool for interactive or static visualization of aligned reads along the genome.
Ran ./scripts/format-source