updated cygwin config to  use the right path for  blas and lapack
added option to save solution DOF after the time step
configure now respect PROTEUS_ARCH env var
Merge pull request #36 from erdc-cm/generalize_configure

configure now respects PROTEUS_ARCH env var
Merge pull request #37 from erdc-cm/save_dof

added option to save solution DOF after the time step
Improve Makefile (Cygwin Bootstrap, Doc Fixes)
hashstack2 -> hashstack
Merge pull request #40 from erdc-cm/ahmadia/restore_bootstrap

Improve Makefile (Cygwin Bootstrap, Doc Fixes)
Merge remote-tracking branch 'master' into HEAD

Conflicts:
	Makefile