PlotPyramid now can work in background

Fixed a bug with Plot when plotting OGC shapes of type  GeometryCollection
Refactor: RecoverHoles extract a function that recovers one image

Create a function that extracts all command line arguments into one configuration
Use NASARectangle instead of NASAPoint in PlotPyramid
Merge branch 'master' of ssh://ibn-sina.cs.umn.edu/project/alexandria08/shadoop-ext
FileMBR now uses the simpler format
Both FileMBR and Plot now work with the new interface
PlotPyramid now works with the new interface
Use Configuration instead of Map in CommandLineArguments
fix the output format to work with SpatialHadoop directly
Merge branch 'master' of ssh://ibn-sina.cs.umn.edu/project/alexandria08/shadoop-ext
Write the output of PlotPyramid in the correct path and avoid renaming files in the output committer
Uncomment the line that covers holes
Merge branch 'master' of ssh://ibn-sina.cs.umn.edu/project/alexandria08/shadoop-ext
Use the correct method name
Merge branch 'master' of ssh://ibn-sina.cs.umn.edu/project/alexandria08/shadoop-ext into reduce-params
Changed methods to use the new interface (not working yet)
Resolved all compilation errors
Changed Union to work with JTS and ESRI shapes
Added a deprecated version of old methods for backward compatibility

Resolved a bug with Rectangle#contains