1. Some bug fix for the multiscale simulation. More testing to do, but it looks like it's working.
2. I've started re-defining the parameters for the "perfect-match" simulations. They now grab the data on figshare and run everything. I've also commented much more the script (although the pipeline/brick are not too well commented). In any case, at this stage somebody should be able to re-run the simulation from scratch just by downloading the code and calling the script.