Temporarily disabling recover for the material output stuff

Refs #3129.
Mesh was too coarse for solution (#3132)
Fixing variable shadowing warning.

Refs #000.
fix memory leak closes #3131
Disabled boundary test in recover (#3082)
Merge pull request #3130 from jwpeterson/material_output_recover

Temporarily disabling recover for the material output stuff
Merge pull request #3134 from jwpeterson/fix_shadow

Fixing variable shadowing warning.
Merge pull request #3135 from aeslaughter/output-recover-3082

Disabled boundary test in recover
Merge pull request #3133 from aeslaughter/par-3132

Mesh was too coarse for solution
fix formatting of: for, if, while, switch closes #3136 refs #3137
Merge pull request #3138 from friedmud/for_loop_3136

fix for loop formatting
SideSetsAroundSubdomain runs with ParallelMesh.

The algorithm doesn't use flood().

Refs #2129.
Merge pull request #3139 from jwpeterson/sidesets_around_subdomain

SideSetsAroundSubdomain should work with ParallelMesh
Fix broken header guard. (Closes #3143)
Merge pull request #3144 from dschwen/headerguard_3143

Fix broken header guard.
Beginning FactorySystem work adding Parser #1382
Adding MooseObject.py
refs #1382
Following naming conventions
adding new features to the Parser object
refs #1382
Moving python scripts
refs #1382
Use the new path_tool utility
refs #1382