Merge pull request #1 from srl147/devel

first proper version of norm_fit
Merge pull request #2 from srl147/devel

Devel
Merge pull request #8 from wtsi-npg/devel

inport wtsi-npg changes
Merge branch 'devel' of https://github.com/wtsi-npg/npg_qc into devel
added SpuriousPeaks function
Merge pull request #9 from ia1/devel

from ia1 devel
only run verify_bam_id if single sample expected
Merge pull request #32 from dkj/devel

skip some checks if tools not available
Merge pull request #33 from dkj/verify_bam_single_sample

only run verify_bam_id if single sample expected
Merge pull request #2 from wtsi-npg/devel

update
Added norm_fit tests
Add test for norm_fit_modes
Merge pull request #34 from jenniferliddle/devel

Add norm_fit tests
Merge pull request #35 from wtsi-npg/devel

Release 56.10
Merge remote-tracking branch 'wtsi-npg/devel' into devel
escape hash(#) in RE when using x modifier
fixed bug in FilterDistance, cleaned up SpuriousPeaks
check/genotype.pm
 snp_call_set (set of loci) separated from sequenom_plex (the genotype data), since snp_call_set may be the same for multiple data sets.
 The genotype result object derives its snp_call_set from the check object instead of indirectly from the bam_genotype attribute.
 Both sequenom_plex and snp_call_set are passed to the bam_genotype object at instantiation

utils/bam_genotype.pm
 removed unused json_genotype->{snp_set} - snp set information comes from the pos_snpname_map_filename attribute

find_gt_match.c
 moved printing of header information lower to use data_id from static data header

gt_pack.c
 add new flag to allow specification of data set label in header
Release 56.11
added comments for norm_fit changes (separate pull request)