Started svn repository with latest CVS code, beagle branch and fredrik branch.
Fix of bag when analyzes hang at some generation when unconventional sample frequency was used
Minor changes
Primitive merge of fredrik branch with trunk
In this revision all cvs modifications (made between fredrik branch branched-out and svn was created from cvs including Sebastian's corrections) are merged to trunk. The trunk at revision 18 was descendant of fredrik branch with resent modifications in cvs got lost. So it is effectively the first revision with trunk containing all modification made in cvs and fredrik branch.
Minor fixes to comparetree, plot, sump and sumt.
Fixed problem with compact storage of polytomous trees and topologies. Minor fixes in printing rich consensus trees.
Fixed problems with appending to mcmc and with definition of bitfields.
Fixed problem with appending to data set with deleted taxa.
Small bug fix.
A few more bug fixed in trunk.
Fixed problem with quoted file names and with allocation of activeParams for multiple divisions when the number of current divisions is different from the number of divisions in the most recently defined partition.
Fixed problem with constrained interior root node in unrooted tree.
MPI compile errors are fixed
Added coalescent example file. Changes to beagle branch and some minor fixes to sump and command.c in the trunk.
Fixed minor problem when calculating marginal likelihoods and sump parameter summaries.
Some printing errors with nruns=1 are fixed
gcc (Ubuntu 4.4.1-4ubuntu9) warnings cleaned
New warnings fixes
Quit error is fixed