[FT-193] Reduce waiting time for retrieving clinical + regions data, for aCGH analyses

Implemented "no gorm" version of retrieving regions data
Merge remote-tracking branch 'origin/master'
Integration tests for "no GORM" DataQueryResource service
Test helper class rename
Test both gorm & no gorm versions of DataResourceService
Add files missed in last commit

ALso remove redundant import.
Add code coverage plugin
added eclipse files to gitignore
Merge remote-tracking branch 'upstream/master'
[FT-319] Implement architectural decision, on how to retrieve data from back-end (genome browser)

Transmart changes to support genome browser
[FT-319] Implement architectural decision, on how to retrieve data from back-end (genome browser)

Modified test case: order of entries is not checked
[FT-319] Get regions wider than segment into results
[FT-319] Code simplification.

Use `between` hql operator instead of  `<=` and `>=`
Merge remote-tracking branch 'thehyve/master'
removed Eclipse generated files
added target-eclipse directory to .gitignore
removed in-code referances to theHyve repository
upgraded grails to 2.2.4
added transmart Foundation archive referance for fetching transmart-core-db
added *.zip to git ignore to remove deploy builds from the untracked file list