Added R code for BAMM postprocessing
Change R functions getEventDataDiversification and getRateThroughTime
Add getNetDivRates
Modify getEventData to return mean rates for tips
Merge branch 'master' of https://github.com/macroevolution/bamm
Modify getEventData to accept header line
Change function names
Update getMeanBranchLengthTree
Add comment
Renaming and minor editing
Create R documentation for BammTools
Changes to getEventData.Rd
Added Autotuning function to RCode
Added important & useful functions for summarizing shift probabilities on phylogenies

includes ability to summarize:
1) THe marginal shift probabilities on each branch of tree
2) the CUMULATIVE probability of shift on branch (from root)
3) Function that computes the maximum shift credibility tree

Also a script for testing these.
Fix typo in R function
Add plotRateThroughTime function as well as transparentColor function
Adjustments to plotRateThroughTime R function
More adjustments to plotRateThroughTime R function
Fix minor problem with getSpeciesRateThroughTime
More adjustments to plotRateThroughTime