TGen user page additions. Check my formatting, I think I got it right...?
Needed space in begining as to not ital, also fix AAC url/name
fixed some words
fixed some words
I love git

Merge branch 'master' of https://github.com/caddymob/bcbio-nextgen

Conflicts:
	docs/contents/introduction.rst
that'd be plural, guy
Added McKnight, Dell URL, and a slight tweak to last sentence. Good to go!
Sequencer integration: support shared filesystem setups without external transfer. Enable submission of jobs directly to attached sequencing cluster #391
Merge pull request #398 from caddymob/master

Added TGen to users page
Re-work de-duplication to occur streaming with alignment. Uses samblaster/biobambam to handle de-duplication, avoiding need for BAM preparation step in cases with no realignment and recalibration.
Documentation: Add wget to required software for installation. Thanks to Tim Hughes. Add pointers to downstream analysis tools, thanks to @lbeltrame #195
Add module for streaming de-duplication integrated with alignment
Merge branch 'master' of github.com:chapmanb/bcbio-nextgen
Merge discordant and split read pairs from alignment parts when using samblaster. Avoid needing to re-run analysis during lumpy SV calling
Perform regional splitting of samples grouped by batches instead of globally. Enables more complex sample input setups.
Add slides from ABCD talk. Clean up talk list and add link to images for reuse
Handle avoiding low complexity subsets on regions if supplied as tuple instead of BED file
Update outputs.rst

another way to visualize coverage for targeted NGS (exome) experiments
Update outputs.rst
Provide ability to specify a global temporary directory in resources. Helps avoid shared filesystem IO when large local /scratch disk is present on machines. Fixes #399