modify Allwmake script so each application saves the compiler output into a log file

In case compiling gives some errors, search these *.log files for clues.
modify to ignore compiler log files and Fortran compiled files

Compiling Fortran code produces modules, objects, and libraries (*.mod, *.o, *.a); and these files are compiler/system specific and should not be tracked. The compiler log files are also system specific, and can sometimes become large.
add instructions to "make clean" FAST

This also removes the compiled FAST executable and library.
fix FAST compiler errors using gfortran on linux

I replaced this version of HydroCalc.f90 with the version from
FAST v7.02.00d-bjj.

The subroutine SmllRotTrans was being called with too many
arguments, so I removed the last one (it was just for console
output -- didn't seem too important)

Thanks to the clues on NWTC forums to fix this, can read more about here:
https://wind.nrel.gov/forum/wind/viewtopic.php?f=4&t=540&p=1984&hilit=seed#p1984
modify FAST makefile to fix compiler errors with gfotran on linux

I had to add the "-shared" and "-fPIC" compiler flags to fix some
very cryptic compiler errors coming from GCC. An example of such
errors looks something like:

	danny@kubuntu:~/OpenFOAM/danny-2.3.0/SOWFA/src/openfast/bin$ make
	/usr/bin/ld: /usr/lib/debug/usr/lib/x86_64-linux-gnu/crt1.o(.debug_info): relocation 0 has invalid symbol index 11
	/usr/bin/ld: /usr/lib/debug/usr/lib/x86_64-linux-gnu/crt1.o(.debug_info): relocation 1 has invalid symbol index 12
	.
	. (and so on...)
	.
	/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crt1.o: In function `_start':
	(.text+0x20): undefined reference to `main'
	collect2: error: ld returned 1 exit status
	make: *** [FAST] Error 1

Anyways, the additional compiler flags "-shared -fPIC" seemed to
fix these errors, hope it works for you too.
modify the pathname to copy the compiled library libfast
add instructions to "make clean" FAST

This also removes the compiled FAST executable and library.
restore the horizontalAxisWindTurbinesALM.tower_nacelle model

This folder was deleted at some point, but it sounds interesting...let's
bring it back by checking out the original commit using:
$ git checkout f4e68d1856d4debe58d82e80847b375f47d4e4cf -- src/turbineModels/
remove ignored files -- just cleaning up
Added versions of ABL and wind plant solvers compatible with OpenFOAM 2.1 and higher.  Had to change the call to the PIMPLE loop. -- M. Churchfield -- 4 June 2014