Squashed commit of the following:

commit b7f74adac8988fb45635744715de5c8588e44747
Author: Stian Soiland-Reyes <soiland-reyes@cs.manchester.ac.uk>
Date:   Tue Nov 18 16:51:09 2014 +0000

    Ignore Empty content

commit c9272523938d92bde1b1308446a895fa65a590b1
Author: Stian Soiland-Reyes <soiland-reyes@cs.manchester.ac.uk>
Date:   Tue Nov 18 16:50:55 2014 +0000

    No, don't test those

commit ea23279367323208c838e07816e843d285f340bb
Author: Stian Soiland-Reyes <soiland-reyes@cs.manchester.ac.uk>
Date:   Tue Nov 18 16:32:33 2014 +0000

    For debugging, replace back http://localhost to https://w3id.org/

commit a6421f4a8b4424999ea8c8a1672780f3a82e2501
Author: Stian Soiland-Reyes <soiland-reyes@cs.manchester.ac.uk>
Date:   Tue Nov 18 16:24:37 2014 +0000

    and cat the checking-uris.txt

commit fa18f53a5a90c28af8ada023fe9107748cfaa966
Author: Stian Soiland-Reyes <soiland-reyes@cs.manchester.ac.uk>
Date:   Tue Nov 18 16:24:03 2014 +0000

    RewriteEngine On again for bundle

commit 1c2bb09e5b279290c91d98bcdf1de4dae3eae7f8
Author: Stian Soiland-Reyes <soiland-reyes@cs.manchester.ac.uk>
Date:   Tue Nov 18 16:23:07 2014 +0000

    About security/

commit f33df651530256b23389d0d0c494a8e6a0374d29
Author: Stian Soiland-Reyes <soiland-reyes@cs.manchester.ac.uk>
Date:   Tue Nov 18 16:20:59 2014 +0000

    README for 3rs

commit d36982d32190ac43900c52c61eb0946c6e429405
Author: Stian Soiland-Reyes <soiland-reyes@cs.manchester.ac.uk>
Date:   Tue Nov 18 16:13:33 2014 +0000

    Order of sed matters! :)

commit b9a3453c42b68833b406f3caf916fc55144ce832
Author: Stian Soiland-Reyes <soiland-reyes@cs.manchester.ac.uk>
Date:   Tue Nov 18 16:11:32 2014 +0000

    No.. we need full sed first!

commit 0055527196b4f69661319820edfbca15624c9a3b
Author: Stian Soiland-Reyes <soiland-reyes@cs.manchester.ac.uk>
Date:   Tue Nov 18 16:06:58 2014 +0000

    test: What if REwriteEngine Off

commit 452b47cc3ef8dbd6d66c839109684f0a95f7a5aa
Author: Stian Soiland-Reyes <soiland-reyes@cs.manchester.ac.uk>
Date:   Tue Nov 18 16:06:33 2014 +0000

    error log to &2

commit 17e62434dccc4fb042fe7959f4823dd1428c5eaf
Author: Stian Soiland-Reyes <soiland-reyes@cs.manchester.ac.uk>
Date:   Tue Nov 18 16:05:48 2014 +0000

    Avoid double "Command exited with 0" in travis

commit ced3062e172830ca167efd2b49cec2862c3fbe28
Author: Stian Soiland-Reyes <soiland-reyes@cs.manchester.ac.uk>
Date:   Tue Nov 18 16:00:17 2014 +0000

    Modify checking-URIs

commit 7314ec971a3a9b157e1ae874c437f66bc4ad19c8
Author: Stian Soiland-Reyes <soiland-reyes@cs.manchester.ac.uk>
Date:   Tue Nov 18 15:57:31 2014 +0000

    Expose captured URIs

commit a98ab9fea977052c319bd04715a134a6ae55cad2
Author: Stian Soiland-Reyes <soiland-reyes@cs.manchester.ac.uk>
Date:   Tue Nov 18 15:56:27 2014 +0000

    No need for tailing access.log

commit c43f2bb454c709b901e25bdd3c2f70d19fec82d8
Author: Stian Soiland-Reyes <soiland-reyes@cs.manchester.ac.uk>
Date:   Tue Nov 18 15:55:54 2014 +0000

    Uups..

commit 16cf5e719e39ad5d59dad821029e248ae5844e9b
Author: Stian Soiland-Reyes <soiland-reyes@cs.manchester.ac.uk>
Date:   Tue Nov 18 15:52:42 2014 +0000

    More README..

commit b24a14c4ac59c2f68c978684d61700f2ca752b4d
Author: Stian Soiland-Reyes <soiland-reyes@cs.manchester.ac.uk>
Date:   Tue Nov 18 15:50:31 2014 +0000

    Markdown........

commit cacf17393679e0e56bd8c1a7a09b46ccd06314b3
Author: Stian Soiland-Reyes <soiland-reyes@cs.manchester.ac.uk>
Date:   Tue Nov 18 15:49:38 2014 +0000

    this -> perma-id/w3id.org (as it would be forked allover)

commit f808c5bfe23219255608bc86a7b8de26873a1ac6
Author: Stian Soiland-Reyes <soiland-reyes@cs.manchester.ac.uk>
Date:   Tue Nov 18 15:48:36 2014 +0000

    pull request

commit 6075e500b8a79b9da017ef76c70d57b9e39ee8bb
Author: Stian Soiland-Reyes <soiland-reyes@cs.manchester.ac.uk>
Date:   Tue Nov 18 15:47:31 2014 +0000

    Markdown..

commit 13bf93ec37520bff3151c74d2005b710e40ab82b
Author: Stian Soiland-Reyes <soiland-reyes@cs.manchester.ac.uk>
Date:   Tue Nov 18 15:45:59 2014 +0000

    README about README.md ..

commit d42bd04ebd2851ce62203a0dee8768f6ab4182c0
Author: Stian Soiland-Reyes <soiland-reyes@cs.manchester.ac.uk>
Date:   Tue Nov 18 15:42:19 2014 +0000

    Undo temporary syntax error (avoid 500 error)

commit 2a3ba8387fc6aa38b44698fa8fb035d3505e3058
Author: Stian Soiland-Reyes <soiland-reyes@cs.manchester.ac.uk>
Date:   Tue Nov 18 15:42:11 2014 +0000

    Only README.md

commit 0040c513857721d42c274a56c3cfaee068473ec4
Merge: 10fae74 ca25dfa
Author: Stian Soiland-Reyes <soiland-reyes@cs.manchester.ac.uk>
Date:   Tue Nov 18 15:38:00 2014 +0000

    Merge remote-tracking branch 'upstream/master' into travis-checker

commit 10fae74c8f07a34aedd4599544db9f790f31d1eb
Author: Stian Soiland-Reyes <soiland-reyes@cs.manchester.ac.uk>
Date:   Tue Nov 18 15:37:44 2014 +0000

    Logging done in before-script

commit 3309be2903426706b9c9b440037f69d9e3e7a3dd
Author: Stian Soiland-Reyes <soiland-reyes@cs.manchester.ac.uk>
Date:   Tue Nov 18 15:26:07 2014 +0000

    sudo for logs

commit 9df189b86ac5e3a4d16d0cb7b3045436d9804e26
Author: Stian Soiland-Reyes <soiland-reyes@cs.manchester.ac.uk>
Date:   Tue Nov 18 15:25:59 2014 +0000

    Experiment: Broken .htaccess

commit 7981ce8fe03066406e170b59324d464ce842262b
Author: Stian Soiland-Reyes <soiland-reyes@cs.manchester.ac.uk>
Date:   Tue Nov 18 15:24:57 2014 +0000

    sudo for tail

commit c94f9ad64cfd32212ca4d4486297c6089003f4c0
Author: Stian Soiland-Reyes <soiland-reyes@cs.manchester.ac.uk>
Date:   Tue Nov 18 15:17:02 2014 +0000

    or perhaps just a sudo..

commit 434a02ef136ec9a0c26dc0c79d76690a9ffacb55
Author: Stian Soiland-Reyes <soiland-reyes@cs.manchester.ac.uk>
Date:   Tue Nov 18 15:16:30 2014 +0000

    port 80 bad, perhaps 8080 OK?

commit 7b801d61854700945d266247662e062e5156cbad
Author: Stian Soiland-Reyes <soiland-reyes@cs.manchester.ac.uk>
Date:   Tue Nov 18 15:11:43 2014 +0000

    include access logs

commit 5b779c662cfd8c1de44b25055b11399204ecefdd
Author: Stian Soiland-Reyes <soiland-reyes@cs.manchester.ac.uk>
Date:   Tue Nov 18 15:05:07 2014 +0000

    find -name

commit 7d0facf0d9fe32390a3c9f922ca6862b09466d5f
Author: Stian Soiland-Reyes <soiland-reyes@cs.manchester.ac.uk>
Date:   Tue Nov 18 15:04:10 2014 +0000

    use http://localhost instead of https://w3id.org

commit 9866612ac1edd0fcbcc9b96f857ce784e0989117
Author: Stian Soiland-Reyes <soiland-reyes@cs.manchester.ac.uk>
Date:   Tue Nov 18 15:02:27 2014 +0000

    mkdir..

commit cd5e66f6874d3d11b366e2b3b0e8a72ef53bd714
Author: Stian Soiland-Reyes <soiland-reyes@cs.manchester.ac.uk>
Date:   Tue Nov 18 15:01:45 2014 +0000

    and sudo for cp..

commit ac8d03289a34cb48d75bf1dc6a8bb244fedbc522
Author: Stian Soiland-Reyes <soiland-reyes@cs.manchester.ac.uk>
Date:   Tue Nov 18 15:01:01 2014 +0000

    /var/www - not /var/www/html - precise again not being precicse

commit 731595c60cafcddd113df4836781e27e24925fd4
Author: Stian Soiland-Reyes <soiland-reyes@cs.manchester.ac.uk>
Date:   Tue Nov 18 14:58:27 2014 +0000

    sites-enabled/ paths in precise..

commit 1966b37ba7b6d928768be41ee19e8bcabbe50161
Author: Stian Soiland-Reyes <soiland-reyes@cs.manchester.ac.uk>
Date:   Tue Nov 18 14:52:00 2014 +0000

    We'll use just grep/sed and linkchecker instead

commit a2aa18380f9d4639c3dcdc6b8ed03dc266bc39ee
Author: Stian Soiland-Reyes <soiland-reyes@cs.manchester.ac.uk>
Date:   Tue Nov 18 14:21:26 2014 +0000

    Also need libicu-dev ! Ruby.........!!!!!!

commit 81ab8f2cbbebe5eaa7a2579e1ef10554ae6f757d
Author: Stian Soiland-Reyes <soiland-reyes@cs.manchester.ac.uk>
Date:   Tue Nov 18 14:20:26 2014 +0000

    Avoid hardcoding ~/.gems etc

commit 348a375bb8e88652ede4461ab24b16a8da900b44
Author: Stian Soiland-Reyes <soiland-reyes@cs.manchester.ac.uk>
Date:   Tue Nov 18 14:14:15 2014 +0000

    before_script etc..

commit a33c5efb435f4712b9b631846ee36923acb011c8
Author: Stian Soiland-Reyes <soiland-reyes@cs.manchester.ac.uk>
Date:   Tue Nov 18 14:12:27 2014 +0000

    Travis: assume /etc/apache2/sites-enabled/*

commit 36764c2853c6f6d87470c31b0c162dd5560df77c
Author: Stian Soiland-Reyes <soiland-reyes@cs.manchester.ac.uk>
Date:   Tue Nov 18 14:09:08 2014 +0000

    some sudo for travis..

commit 1904cd1a9a95200f795f333ceda4e434285eb2d2
Author: Stian Soiland-Reyes <soiland-reyes@cs.manchester.ac.uk>
Date:   Tue Nov 18 14:07:52 2014 +0000

    Also install apache2 ,test through http://localhost

commit d3a7cd2f8c7f6c7ecad12feab8cbb6b138797dd3
Author: Stian Soiland-Reyes <soiland-reyes@cs.manchester.ac.uk>
Date:   Tue Nov 18 13:25:52 2014 +0000

    .travis.yml for checking links in README.md

commit 392be3554dd73eefc0b9faff48356771a25f1b30
Author: Stian Soiland-Reyes <soiland-reyes@cs.manchester.ac.uk>
Date:   Tue Nov 18 13:31:40 2014 +0000

    travis link
Merge pull request #59 from stain/travis-check-readme

Check README/.htaccess using travis-ci.org