Merge of the filename changes in develop into CustomGenerator.  Seems OK.


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Commit of remaining files from merge with develop branch


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Added print statements that indicate IP progress


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Commit of documentation remaining from merge with develop


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Merge branch 'feature/various_cleanup' into develop


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Large batch of file renames.  I have attempted to change the code and init files where ever possible, but have no doubt missed some.


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Merge branch 'develop' into feature/CustomGenerator


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Rename of ALG folder to Algorithms


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Rename of GEN folder to Generators


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Rename of folder BAS to Base


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Rename of folder NET to Network


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Rename folder VIS to Visualization


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Update of code to reflect renaming of folders.  I searched in all files, so hopefully didn't miss any.  My run_script works, so I got most at least.


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More deletions/renames


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Merge of file/folder/module name changes in develop onto PhysicsModule feature


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Rename of PHYS to Physics on the PhysicsModule feature branch


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Merge branch 'develop' into feature/CustomGenerator


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IP algorithm now has the toggle of timing='OFF' or timing='ON' to turn off or on the Haine's jump logic.


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Documentation updates


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Code written for importing from mat (OpenPNM.Generators.ImportMat). Still need to document required file formats.


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