Improve sed command
Redirect output of sed --version to /dev/null
Merge pull request #1487 from hflynn/docs-tidy

Tidying stuff from nitpicks
Use Javadocs rather than source code links when possible
Merge pull request #1461 from csachs/nd2-string-read-fix

Changed ND2 metadata string handling to work properly with empty strings
Merge pull request #1478 from rleigh-dundee/cpp-xmltools

C++: Add helpers for XML serialisation
Merge pull request #1483 from sbesson/ant_updatecopyright

Update copyright: add support for unicode
Use proper Sphinx markup in Cell Profiler users page
Merge pull request #1491 from sbesson/cellprofiler_markup

Use proper Sphinx markup in Cell Profiler users page
merge develop -Dorg -Ssuccess-only: PR 1407 (TIFF: fix plane count calculation for pyramids with multiple planes)
merge develop -Dorg -Ssuccess-only: PR 1442 (Update roi handler)
merge develop -Dorg -Ssuccess-only: PR 1477 (Flex: improved metadata handling)
merge develop -Dorg -Ssuccess-only: PR 1480 (Imspector OBF: support version 5 stacks)
merge develop -Dorg -Ssuccess-only: PR 1481 (cpp: bioformats: Add resolve argument to resolveReferences)
merge develop -Dorg -Ssuccess-only: PR 1484 (Review setId() Javadocs for readers/writers)
merge develop -Dorg -Ssuccess-only: PR 1485 (minor nitpick tweaks to docs)
merge develop -Dorg -Ssuccess-only: PR 1486 (add an overview for new Bio-Formats developers)
merge develop -Dorg -Ssuccess-only: PR 1489 (Use Javadocs rather than source code links when possible)
merge develop -Dorg -Ssuccess-only

Repository: openmicroscopy/bioformats
Excluded PRs:
  # PR 1482 rleigh-dundee 'xsd-fu: Use multi-index for C++ reference lists' (status: pending)
  # PR 1492 sbesson 'Command line profiling' (status: pending)
  # PR 1381 melissalinkert 'Parse physical pixel sizes from CellSens .vsi datasets' (label: exclude)
  # PR 1161 sommerc 'Initial CellH5 Reader class' (user: sommerc)
  # PR 1488 bjoernthiel 'Read up to stack version 5' (user: bjoernthiel)
  # PR 857 melissalinkert 'Initial support for Zeiss .lms files' (label: exclude)
  # PR 1015 qidane 'Messy binary' (exclude comment)
  # PR 1479 qidane 'Updated XSLT for units conversion' (exclude comment)
  # PR 1493 melissalinkert 'Add a page that gives an overview of each repository component' (status: pending)
  # PR 858 melissalinkert 'Initial support for Veeco AFM data' (label: exclude)
  # PR 1443 joshmoore 'Genshi ZIP' (label: exclude)
  # PR 1177 rleigh-dundee 'specification: Add metadata for HDF5 embedding' (exclude comment)
  # PR 1426 qidane 'Initial Rendering Definitions schema' (exclude comment)
  # PR 1309 melissalinkert 'Allow tile-based access of large JPEG-2000 images' (exclude comment)
Updating cfb6648..e223707
Previously merged:
  # PR 1491 sbesson 'Use proper Sphinx markup in Cell Profiler users page'
  # PR 1483 sbesson 'Update copyright: add support for unicode'
  # PR 1478 rleigh-dundee 'C++: Add helpers for XML serialisation'
  # PR 1461 csachs 'Changed ND2 metadata string handling to work properly with empty strings'
  # PR 1487 hflynn 'Tidying stuff from nitpicks'

Merged PRs:
  # PR 1407 melissalinkert 'TIFF: fix plane count calculation for pyramids with multiple planes'
  # PR 1442 bramalingam 'Update roi handler'
  # PR 1477 melissalinkert 'Flex: improved metadata handling'
  # PR 1480 melissalinkert 'Imspector OBF: support version 5 stacks'
  # PR 1481 rleigh-dundee 'cpp: bioformats: Add resolve argument to resolveReferences'
  # PR 1484 sbesson 'Review setId() Javadocs for readers/writers'
  # PR 1485 mtbc 'minor nitpick tweaks to docs'
  # PR 1486 mtbc 'add an overview for new Bio-Formats developers'
  # PR 1489 sbesson 'Use Javadocs rather than source code links when possible'

Generated by OME-5.1-merge-push#648 (http://ci.openmicroscopy.org/job/OME-5.1-merge-push/648/)
Update auto-generated documentation

Repository: snoopycrimecop/bioformats

Generated by BIOFORMATS-5.1-merge-docs-autogen#135 (http://ci.openmicroscopy.org/job/BIOFORMATS-5.1-merge-docs-autogen/135/)