- Ignored N in input sequence when reading fasta file
- Added indicators of progress
- small changes and temporary things
- Merged readData and createDocuments into one method readData
- Fixed a bug with only getting len(dna)-k shingles instead of len(dna)-k+1
- preserve memory by not storing document shingles in memory - requires document shingles to be computed twice
- Updated minhash function accordingly
- Fixed the way the number of candidate pairs are computed