Added the tigre package (previous tiger).


git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/tigre@45874 bc3139a8-67e5-0310-9ffc-ced21a209358
Documentation and citation information updates for 'tigre'.


git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/tigre@46372 bc3139a8-67e5-0310-9ffc-ced21a209358
Bumped version numbers for BioC 2.6 release

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/tigre@46401 bc3139a8-67e5-0310-9ffc-ced21a209358
Bumped version numbers for BioC 2.7 trunk

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/tigre@46405 bc3139a8-67e5-0310-9ffc-ced21a209358
tigre 1.3.1:
* Fix baseline log-likelihood computation
* Robustify against genes with constant zero expression
* Fix package name in data files
* Documentation and citation information updates


git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/tigre@49491 bc3139a8-67e5-0310-9ffc-ced21a209358
Tigre 1.3.2: add database export for tigreBrowser,
robustify kernel computation numerics.


git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/tigre@50032 bc3139a8-67e5-0310-9ffc-ced21a209358
tigre 1.3.3: a number of minor fixes and improvements.


git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/tigre@50115 bc3139a8-67e5-0310-9ffc-ced21a209358
Bumped version numbers for BioC 2.6 release


git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/tigre@50293 bc3139a8-67e5-0310-9ffc-ced21a209358
Bumped version numbers again for new BioC 2.8 devel cycle.
ERRATA: Previous bump was for BioC 2.7 release (of course), not 2.6!


git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/tigre@50295 bc3139a8-67e5-0310-9ffc-ced21a209358
tigre 1.5.1: minor output and documentation improvements.


git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/tigre@51975 bc3139a8-67e5-0310-9ffc-ced21a209358
tigre 1.5.2: bugfixes to scoreList::sort and working on non-Affy data.


git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/tigre@52644 bc3139a8-67e5-0310-9ffc-ced21a209358
tigre 1.5.3: function documentation updates to remove package check
warnings.


git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/tigre@53985 bc3139a8-67e5-0310-9ffc-ced21a209358
Bumped version numbers for BioC 2.8 release.

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/tigre@54800 bc3139a8-67e5-0310-9ffc-ced21a209358
Bumped version numbers again for new BioC 2.9 devel cycle.

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/tigre@54802 bc3139a8-67e5-0310-9ffc-ced21a209358
tigre 1.7.1: target ranking now works with >= 10 known targets (thanks to Jake Michaelson for the report)


git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/tigre@55085 bc3139a8-67e5-0310-9ffc-ced21a209358
tigre 1.7.2: R-2.14 compatibility update and speed optimisations.


git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/tigre@56077 bc3139a8-67e5-0310-9ffc-ced21a209358
tigre 1.7.3: better data import from lumi.


git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/tigre@57287 bc3139a8-67e5-0310-9ffc-ced21a209358
tigre-1.7.4: R-2.14 compatibility fix, as well as some cosmetic changes.


git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/tigre@59332 bc3139a8-67e5-0310-9ffc-ced21a209358
tigre: Trivial documentation update.


git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/tigre@59333 bc3139a8-67e5-0310-9ffc-ced21a209358
tigre-1.7.5: Updated NEWS format.


git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/tigre@59598 bc3139a8-67e5-0310-9ffc-ced21a209358