cleaned up domain include/exclude and added the include-all filter
Merge branch 'master' of github.com:mloudon/dimagi-data-platform-R
exclude NA
fixed NA values as part of filters
remove getwd
Merge pull request #6 from rdayalu/master

183 domains running end-to-end
single pdf creation + allow config file for run to be specified in config_setup.R
Merged Melissa's changes for (1) render and render_debug (2) collating PDFs. Removed graph for total cases modified since we now have correct total cases touched.

Merge branch 'master' of https://github.com/mloudon/dimagi-data-platform-R

Conflicts:
	report_modules/monthly_usage_report.R