add prior as function parameter; add normalize flag
Update ADAM to 0.12.2 snapshot for mdtag and formats changes
Merge pull request #117 from hammerlab/bayes-update

Add prior as function parameter; Add normalize flag
Merge pull request #118 from hammerlab/adam-update

Update ADAM to 0.12.2 snapshot for mdtag and formats changes
start on window based structural variant caller
rewrite of structural variant caller
add inversion and duplication test files
update to use tumor/normal reads
trying to fix mdtag issue