added temporary timer
made strand a required arg to bamliquidator_regions, preparing for adding chr args
added chromosome args to bamliquidator_regions
changed define to not break boost
implemented invalid region exclusion
removing index check
removed region stop checking logic
updated test
replaced sorted vector with set for clarity
put back in region range checking
corrected test
fixed bamliquidator bin possible no-null terminated strings
corrected test
corrected region liquidation possible non-null terminated strings
removed no longer needed max_lengthed_string func
removed no longer needed stderr suppression

this was just added in because previously a bad region would cause samtools to write to stderr,
which could clog up output.  but now we check the region before calling samtools, so we
shouldn't run into this case anymore.  if samtools does error despite the check, bamliquidator halts,
and writing to stderr here is ok
removed old comments
fixed missing member in BaseLiquidator
Merge pull request #34 from BradnerLab/exclude_bad_regions

Exclude bad regions