fix local runs, refactor
add exec script to root, further refactor
refactor (avoid placeholders)
refactor (3)
add out prefix for mapping
be more specific about intermediate files
better child process control
version bump, clean up setup script
makefile change
add requirements to manifest
fix Makefile
yet another build fix
use no-sync for starting jobs
create exec script on the fly
separate control from algorithm
update README
Merge pull request #29 from escherba/qs_refactor

better subprocess management, refactor