Test script from Brian simulator, also used for benchmarking
Adding some header, license information
Sample scripts to convert from neuron to NSDF, using single cell Hay et,al. L5 Pyr cell model
Sample data from neuron dumps of traubs model & scripts to dump them as NSDF
Programatically generate the figures in the paper illustrating the internals of the NSDF file format
Added path property to model component class. Updated unit test.
Test for model tree creation passes. Next: Connecting it to data .
Cleaned up and refactored the API. Now we have different functions for
adding source datasets for 1D data and 2D data. Function signatures changed.
Intermediate commit. Yet to complete model<->map linking.
Added test case for common prefix.
Model-map linking works! Also refactored some utility functions for
testing into test/util.py.
Completed PoolRoom example. Some cleanup of debug prints.
Code cleanup: in stead of passing ~10 args, use container classes for
passing nsdf data to writer. Implemented for uniformds.
Had missed out the data classes in prev commit.
Completed refactoring the arguments of writer functions into data
container objects.
NSDFWriter now stores a ref to map dataset in groups storing 1D
event/nonuniform datasets. Updated poolroom example to use the data
objects API.
Added test for appening data nonuniform 1d and event 1d datasets.
Added functions for saving data in nan filled format. Yet to do unittest
for the same.
Added function to find first index of a value in numpy array.
Added unit test for appending to vlen nonuniform dataset.
Implemented unittest for nan-filled event data. Fixed expansion of the
dataset for NaN filled version.
Implemented nonuniform with nan-padding and unit test.