Adding storing of cookie when hitting enter or background (if checkbox
selected), was missing.
Wrong path
Updating widgets code to update only once even when plotting multiple
variables , moving around classes where they fit best.
Merge branch 'development' of https://github.com/openworm/org.geppetto.frontend.git into development
Adding requireJS library, implementing adding widget scripts through
requireJS (main.js file). Moving widgets folder inside js folder.
Combining plot libraries into one require line
Updating main.js for requireJS. Fixing some glitches. Renaming classes
for consistency. Shows aspect name when listing watchable variables
Missing library
More refactoring of widgets after finding some of it was missing while
writing tutorial for widgets
Stub for lighting up entities
Break out Geppetto client side setup functions into separate module

-GEPPETTO setup functions moved to separate Init module, which has an
"initialize" function that returns state variables stored in VARS
object.
-Init module also handles attachment of event handlers.
-GEPPETTO#getObjectFromJSONEntity cleaned up.
-Underscore added and used in a few places.
-Fixed a few implicit global variables (missing "var" declarations)
-Removed functions GEPPETTO#mergeEntities, GEPPETTO#divideEntities,
because it appears they are not being used.

-Removes GEPPETTO#setMouseClickListenter,
GEPPETTO#removeMouseClickListenter because they aren't being used (Let
me know if you want them left in.)
Remove /src/main/webapps from <directoryRoots>
Set material color brightness as a function of intensity in GEPPETTO#lightUpEntity

Barring a more advanced solution, setting the material color brightness
as a function of intensity seems to work ok. Requires storing the
original color as a property on the material
Fixes glitch with sph variables
Create config.js file for plot widget. Move js scripts from index to
main.js, move widgets scripts from main.js to includwidget.js
Updates to jsdocs, indent the commands glitch, add G.showConsole()
command
Implementing switch statment for simulation update types
Fixing glitches
Merge branch 'geppetto.init' of
git://github.com/mlolson/org.geppetto.frontend into
mlolson-geppetto.init

Conflicts:
	pom.xml
	src/main/webapp/index.html
	src/main/webapp/js/websocket-handlers/GEPPETTO.SimulationHandler.js
Fixing some of the problems in qunit tests