Add module with general functionality needed throughout the pipeline.
Add pipeline configuration module.
Add module for cleaning up err and out files created during data dumps.
Add module for creating a config file.

The config file contains all species for which we create data dumps
and all parameters defining different types of data dumps.
Add module for organising how to call data dump scripts.
Add module for joining data dump files if necessary.
Add module for checking that parameters are correctly set.
Add module for summarising data dump results.
Add module that returns all species names stored in config file.
Add module for creating system calls to run data dump scripts.
Add module for summarising results.
Add module for validation of data dump files.