Removed ReadSim manuscript form references

The citation can now be found in notes.

Also changed Holger's paper to "to appear"
Updated notes
Created cover letter for Bioinformatician position

http://www.ohr.wisc.edu/WebListing/Unclassified/PVLSummary.aspx?pvl_num=78400

PVL #78400
Removed references section from CV

References now exists as a separate document.

Also added CK, SK, IR and TB to Experience section
Updated Makefile