Fixes to H-Abstraction: Part 2

More fixes found by databaseTest

-switched the order of Ct_H atoms to make it conform more with its parent.

-"Ct_H" was previously changed to include N. A child underneath it
"Ct/H/NonDeC", is it's previous definition without N. 3 rules had their
label changed from Ct_H;X, to CCt/H/NonDeC;X. I checked the source for all
the rules and they shouldn't have N.

-Two rules involving "Y_rad_birad_trirad_quadrad" had the LogicOr expanded
to match the definition in groups.py

-Top rule "X_H_or_Xrad_H_Xbirad_H_Xtrirad_H;Y_rad_birad_trirad_quadrad"
had 'X_H_or_Xrad_H_Xbirad_H_Xtrirad_H' LogicOr expanded to match groups.py

-Rule 'CsXX;InChI=1S/NO3/c2-1(3)4' was changed to
"C/H3/Ct;InChI=1S/NO3/c2-1(3)4". CsXX was presumably some place-holder
that somebody forgot to delete

-In rule "H2O2;O_rad/Cd\H_Cd\H\Cs|Cs", I removed the last '|Cs'. There was
no group for the original, but it matched 'O_rad/Cd\H_Cd\H\Cs'
Fixes to Intra_substitutionCS_cyclization family

Fixes to identical groups for parent and children by making parents more general:
- SJ and SsJ
- SJ-3 and SsJ-3

Fixes to CdsJ_C-3-2 and CdsJ_S-3-2 not being proper children of its parent CJ-3;
they should actually be grandchildren of CJ-3.
Fixes to intra_substitutionS_cyclization family

Fixes to identical groups for parent and children by making parents more general:
- SJ and SsJ
- SJ-3 and SsJ-3
Fixes to intra_substitutionCS_isomerization family

Fixes to identical groups for parent and children by making parents more general:
- SJ and SsJ
Fixes to Intra_substitutionS_isomerization family

Fixes to identical groups for parent and children by making parents more general:
- SJ and SsJ
- SJ-3 and SsJ-3

Fixes to S-Cs(CtHH)C, S-Cs(CtCsH)C, S-Cs(CtCsCs)C groups which did not properly
have Ct groups in them.
Fixes to R_Addition_COm family

Fixed groups CH2CH2CH3 and CH2CH3 so that they are children of
their parent C_rad/H2/Cs

Fixed group CH[CH3]2 to to become a proper child of parent C_rad/H/NonDeC
Fixes to Birad_recombination family

Fixes to C_rad_out_OneDe/O, Cpri_rad_out_NDMustO, Cpri_rad_out_NDMustS,
and C_rad_out_OneDe/S so that they are proper children of their parents
Fixes to lone_electron_pair_bond

Fixed N3sRRR group to have R groups.
Fixed O_atom_singlet group to be O atom single rather than both 2S and 2T
Fixes to HO2_Elimination_from_PeroxyRadical family

Fixed R2OO rate rule to match the definition in groups.py

Fixed R2OO_2H_HCd group to be child of its parent R2OO_2H_HDe
Change Disproportionation training rxn to Arrhenius rather than ArrheniusEP

Currently ArrheniusEP reactions cannot be used as training rxns.  This
may be changed in the future to be more accomodating.